Welcome to Blacktie’s documentation!

Contents:

• Project Summary
  • I want to collaborate with you!
  • Introducing Blacktie: a simpler way to do RNA-seq using Tophat, Cufflinks, and CummeRbund
    • Some of Blacktie’s features include:
  • Getting the code
  • Issue tracking
  • Blacktie Poster
• Installation
  • Requirements
  • Installing the latest version from the git repository
  • Use pip to obtain the package from PyPI
  • Installing without using git or pip for the download
  • Test to see whether the install worked
• Getting started
  • The –prog option
  • The –hide-logs option
  • The –modes option
  • The configuration file
  • Using e-mail notifications
• Tutorial
• Blacktie Auto-Generated Code Documentation
  • calls.py
  • errors.py
  • externals.py
  • misc.py

Indices and tables

• Index
• Module Index
• Search Page